Publications

AIDS

COVID-19 in Africa: preexisting immunity and HIV

Authors Snyman, J., Sanders, E.J., Ndung’u, T.

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Front. Microbiol.

Phylogenetic and Drug-Resistance Analysis of HIV-1 Sequences From an Extensive Paediatric HIV-1 Outbreak in Larkana, Pakistan

Authors Abidi, S.H., Nduva, G.M., Siddiqui, D., Rafaqat, W., Mahmood, S.F., Siddiqui, A.R., Nathwani, A.A., Hotwani, A., Shah, S.A., Memon, S., Sheikh, S.A., Khan, P., Esbjörnsson, J., Ferrand, R.A., Mir, F.

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Front Microbiol

Aggregated Mycobacterium tuberculosis Enhances the Inflammatory Response

Authors Rodel, H.E., Ferreira, I.A.T.M., Ziegler, C.G.K., Ganga, Y., Bernstein, M., Hwa, S.-H., Nargan, K., Lustig, G., Kaplan, G., Noursadeghi, M., Shalek, A.K., Steyn, A.J.C., Sigal, A.

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A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa.

Authors Wilkinson, E., Giovanetti, M., Tegally, H., San, J.E., Lessells, R., Cuadros, D., Martin, D.P., Rasmussen, D.A., Zekri, A.-R.N., Sangare, A.K., Ouedraogo, A.-S., Sesay, A.K., Priscilla, A., Kemi, A.-S., Olubusuyi, A.M., Oluwapelumi, A.O.O., Hammami, A., Amuri, A.A., Sayed, A., Ouma, A.E.O., Elargoubi, A., Ajayi, N.A., Victoria, A.F., Kazeem, A.,...

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PLoS One

HIV incidence in a multinational cohort of men and transgender women who have sex with men in sub-Saharan Africa: Findings from HPTN 075

Authors Sandfort, T.G.M., Mbilizi, Y., Sanders, E.J., Guo, X., Cummings, V., Hamilton, E.L., Akelo, V., Panchia, R., Dominguez, K., Stirratt, M.J., Chege, W., Lucas, J., Gaydos, C.A., Chen, Y.Q., Eshleman, S.H.

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JCI Insight

HIV infection drives interferon signaling within intestinal SARS-CoV-2 target cells

Authors Fardoos, R., Asowata, O.E., Herbert, N., Nyquist, S.K., Zungu, Y., Singh, A., Ngoepe, A., Mbano, I.M., Mthabela, N., Ramjit, D., Karim, F., Kuhn, W., Madela, F.G., Manzini, V.T., Anderson, F., Berger, B., Pers, T.H., Shalek, A.K., Leslie, A., Kløverpris, H.N.

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Nature

SARS-CoV-2 B.1.617.2 Delta variant replication and immune evasion

Authors Mlcochova, P., Kemp, S.A., Dhar, M.S., Papa, G., Meng, B., Ferreira, I.A.T.M., Datir, R., Collier, D.A., Albecka, A., Singh, S., Pandey, R., Brown, J., Zhou, J., Goonawardane, N., Mishra, S., Whittaker, C., Mellan, T., Marwal, R., Datta, M., Sengupta, S., Ponnusamy, K., Radhakrishnan, V.S., Abdullahi, A., Charles, O., Chattopadhyay, P., Devi, P....

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J Infect Dis

SARS-CoV-2 B.1.617 Mutations L452R and E484Q Are Not Synergistic for Antibody Evasion

Authors Ferreira, I.A.T.M., Kemp, S.A., Datir, R., Saito, A., Meng, B., Rakshit, P., Takaori-Kondo, A., Kosugi, Y., Uriu, K., Kimura, I., Shirakawa, K., Abdullahi, A., Agarwal, A., Ozono, S., Tokunaga, K., Sato, K., Gupta, R.K., CITIID-NIHR BioResource COVID-19 Collaboration, Indian SARS-CoV-2 Genomics Consortium, Genotype to Phenotype Japan (G2P-Japan)...

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JCI Insight

Irreversible depletion of intestinal CD4+ T-cells is associated with T-cell activation during chronic HIV infection

Authors Asowata, O.E., Singh, A., Ngoepe, A., Herbert, N., Fardoos, R., Reddy, K., Zungu, Y., Nene, F., Mthabela, N., Ramjit, D., Karim, F., Govender, K., Ndung’u, T., Porterfield, J.Z., Adamson, J.H., Madela, F.G., Manzini, V.T., Anderson, F., Leslie, A., Kløverpris, H.N.

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Front Immunol

Antigen Presenting Cells Contribute to Persistent Immune Activation Despite Antiretroviral Therapy Initiation During Hyperacute HIV-1 Infection

Authors Naidoo, K.K., Ndumnego, O.C., Ismail, N., Dong, K.L., Ndung’u, T.

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