Publications

Nat Commun

Emergence and phenotypic characterization of the global SARS-CoV-2 C.1.2 lineage

Authors Scheepers, C., Everatt, J., Amoako, D.G., Tegally, H., Wibmer, C.K., Mnguni, A., Ismail, A., Mahlangu, B., Lambson, B.E., Martin, D.P., Wilkinson, E., San, J.E., Giandhari, J., Manamela, N., Ntuli, N., Kgagudi, P., Cele, S., Richardson, S.I., Pillay, S., Mohale, T., Ramphal, U., Naidoo, Y., Khumalo, Z.T., Kwatra, G., Gray, G., Bekker, L.-G., Mad...

View Publication

Epidemiology

Rapid replacement of the Beta variant by the Delta variant in South Africa (preprint)

Authors Tegally, H., Wilkinson, E., Althaus, C.L., Giovanetti, M., San, J.E., Giandhari, J., Pillay, S., Naidoo, Y., Ramphal, U., Msomi, N., Mlisana, K., Amoako, D.G., Everatt, J., Mohale, T., Nguni, A., Mahlangu, B., Ntuli, N., Khumalo, Z.T., Makatini, Z., Wolter, N., Scheepers, C., Ismail, A., Doolabh, D., Joseph, R., Strydom, A., Mendes, A., Davis, M...

View Publication

J Immunol Methods

Comprehensive epitope mapping using polyclonally expanded human CD8 T cells and a two-step ELISpot assay for testing large peptide libraries

Authors Michelo, C.M., Dalel, J.A., Hayes, P., Fernandez, N., Fiore-Gartland, A., Kilembe, W., Tang, J., Streatfield, C., Gilmour, J., Hunter, E.

View Publication

Front Oncol

Promoter Hypermethylation Analysis of Host Genes in Cervical Cancer Patients With and Without Human Immunodeficiency Virus in Botswana

Authors Tawe, L., Grover, S., Zetola, N., Robertson, E.S., Gaseitsiwe, S., Moyo, S., Kasvosve, I., Paganotti, G.M., Narasimhamurthy, M.

View Publication

Infectious Diseases (except HIV/AIDS)

Reduced magnitude and durability of humoral immune responses by COVID-19 mRNA vaccines among older adults (preprint)

Authors Brockman, M.A., Mwimanzi, F., Lapointe, H.R., Sang, Y., Agafitei, O., Cheung, P., Ennis, S., Ng, K., Basra, S., Lim, L.Y., Yaseen, F., Young, L., Umviligihozo, G., Omondi, F.H., Kalikawe, R., Burns, L., Brumme, C.J., Leung, V., Montaner, J.S.G., Holmes, D., DeMarco, M., Simons, J., Pantophlet, R., Niikura, M., Romney, M.G.

View Publication

HIV/AIDS

Humoral immune responses to COVID-19 vaccination in people living with HIV receiving suppressive antiretroviral therapy (preprint)

Authors Brumme, Z.L., Mwimanzi, F., Lapointe, H.R., Cheung, P., Sang, Y., Duncan, M.C., Yaseen, F., Agafitei, O., Ennis, S., Ng, K., Basra, S., Lim, L.Y., Kalikawe, R., Speckmaier, S., Moran-Garcia, N., Young, L., Ali, H., Ganase, B., Umviligihozo, G., Omondi, F.H., Atkinson, K., Sudderuddin, H., Toy, J., Sereda, P., Burns, L., Costiniuk, C.T., Cooper, ...

View Publication

AIDS

COVID-19 in Africa: preexisting immunity and HIV

Authors Snyman, J., Sanders, E.J., Ndung’u, T.

View Publication

Front. Microbiol.

Phylogenetic and Drug-Resistance Analysis of HIV-1 Sequences From an Extensive Paediatric HIV-1 Outbreak in Larkana, Pakistan

Authors Abidi, S.H., Nduva, G.M., Siddiqui, D., Rafaqat, W., Mahmood, S.F., Siddiqui, A.R., Nathwani, A.A., Hotwani, A., Shah, S.A., Memon, S., Sheikh, S.A., Khan, P., Esbjörnsson, J., Ferrand, R.A., Mir, F.

View Publication

Front Microbiol

Aggregated Mycobacterium tuberculosis Enhances the Inflammatory Response

Authors Rodel, H.E., Ferreira, I.A.T.M., Ziegler, C.G.K., Ganga, Y., Bernstein, M., Hwa, S.-H., Nargan, K., Lustig, G., Kaplan, G., Noursadeghi, M., Shalek, A.K., Steyn, A.J.C., Sigal, A.

View Publication

A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa.

Authors Wilkinson, E., Giovanetti, M., Tegally, H., San, J.E., Lessells, R., Cuadros, D., Martin, D.P., Rasmussen, D.A., Zekri, A.-R.N., Sangare, A.K., Ouedraogo, A.-S., Sesay, A.K., Priscilla, A., Kemi, A.-S., Olubusuyi, A.M., Oluwapelumi, A.O.O., Hammami, A., Amuri, A.A., Sayed, A., Ouma, A.E.O., Elargoubi, A., Ajayi, N.A., Victoria, A.F., Kazeem, A.,...

View Publication