Publications

AIDS Research and Human Retroviruses

Complex Subtype Diversity of HIV-1 Among Drug Users in Major Kenyan Cities

Authors Gounder, K., Oyaro, M., Padayachi, N., Zulu, T.M., de Oliveira, T., Wylie, J., Ndung’u, T.

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Virus Evolution

A35 Viral evolution and innate immune responses during acute HIV-1 infection and their association with disease pathogenesis

Authors Hassan, A.S., Hare, J., Kamini, G., Yindom, L.M., Kamali, A., Karita, E., Kilemba, W., Price, M.A., Borrow, P., Bjorkman, P., Albert, J., Kaleebu, P., Allan, S., Fast, P., Hunter, E., Gilmour, J., Ndung’u, T., Rowland-Jones, S., Sanders, E.J., Esbjornsson, J.

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AIDS

Defining HIV-1 transmission clusters based on sequence data

Authors Hassan, A.S., Pybus, O.G., Sanders, E.J., Albert, J., Esbjörnsson, J.

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JAIDS Journal of Acquired Immune Deficiency Syndromes

Brief Report: High Sensitivity and Specificity of the Cepheid Xpert HIV-1 Qualitative Point-of-Care Test Among Newborns in Botswana

Authors Ibrahim, M., Moyo, S., Mohammed, T., Mupfumi, L., Gaseitsiwe, S., Maswabi, K., Ajibola, G., Gelman, R., Batlang, O., Sakoi, M., Auletta-Young, C., Makhema, J., Lockman, S., Shapiro, R.L.

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Clinical Infectious Diseases

Plasma But Not Cerebrospinal Fluid Interleukin 7 and Interleukin 5 Levels Pre–Antiretroviral Therapy Commencement Predict Cryptococcosis-Associated Immune Reconstitution Inflammatory Syndrome

Authors Akilimali, N.A., Chang, C.C., Muema, D.M., Reddy, T., Moosa, M.-Y.S., Lewin, S.R., French, M.A., Ndung’u, T.

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Front. Immunol.

Cellular Architecture of Spinal Granulomas and the Immunological Response in Tuberculosis Patients Coinfected with HIV

Authors Bhattacharya, D., Danaviah, S., Muema, D.M., Akilimali, N.A., Moodley, P., Ndung’u, T., Das, G.

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Open Forum Infectious Diseases

Relationship of Human Immunodeficiency Virus Viral Load in Cerebrospinal Fluid and Plasma in Patients Co-infected With Cryptococcal Meningitis

Authors Chang, C.C., Kangethe, R., Omarjee, S., Hiramen, K., Gosnell, B., Sojane, K., Moosa, M.-Y.S., Lewin, S.R., French, M.A., Ndung’u, T.

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AIDS

Early evolution of human leucocyte antigen-associated escape mutations in variable Gag proteins predicts CD4+ decline in HIV-1 subtype C-infected women

Authors Chopera, D.R., Ntale, R., Ndabambi, N., Garrett, N., Gray, C.M., Matten, D., Abdool Karim, Q., Abdool Karim, S., Williamson, C.

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BMC Infect Dis

Development and validation of a risk score to assist screening for acute HIV-1 infection among men who have sex with men

Authors Dijkstra, M., de Bree, G.J., Stolte, I.G., Davidovich, U., Sanders, E.J., Prins, M., Schim van der Loeff, M.F.

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Immunity

Lactobacillus-Deficient Cervicovaginal Bacterial Communities Are Associated with Increased HIV Acquisition in Young South African Women

Authors Gosmann, C., Anahtar, M.N., Handley, S.A., Farcasanu, M., Abu-Ali, G., Bowman, B.A., Padavattan, N., Desai, C., Droit, L., Moodley, A., Dong, M., Chen, Y., Ismail, N., Ndung’u, T., Ghebremichael, M.S., Wesemann, D.R., Mitchell, C., Dong, K.L., Huttenhower, C., Walker, B.D., Virgin, H.W., Kwon, D.S.

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