Publications

PLoS One

HIV incidence in a multinational cohort of men and transgender women who have sex with men in sub-Saharan Africa: Findings from HPTN 075

Authors Sandfort, T.G.M., Mbilizi, Y., Sanders, E.J., Guo, X., Cummings, V., Hamilton, E.L., Akelo, V., Panchia, R., Dominguez, K., Stirratt, M.J., Chege, W., Lucas, J., Gaydos, C.A., Chen, Y.Q., Eshleman, S.H.

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JCI Insight

HIV infection drives interferon signaling within intestinal SARS-CoV-2 target cells

Authors Fardoos, R., Asowata, O.E., Herbert, N., Nyquist, S.K., Zungu, Y., Singh, A., Ngoepe, A., Mbano, I.M., Mthabela, N., Ramjit, D., Karim, F., Kuhn, W., Madela, F.G., Manzini, V.T., Anderson, F., Berger, B., Pers, T.H., Shalek, A.K., Leslie, A., Kløverpris, H.N.

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Nature

SARS-CoV-2 B.1.617.2 Delta variant replication and immune evasion

Authors Mlcochova, P., Kemp, S.A., Dhar, M.S., Papa, G., Meng, B., Ferreira, I.A.T.M., Datir, R., Collier, D.A., Albecka, A., Singh, S., Pandey, R., Brown, J., Zhou, J., Goonawardane, N., Mishra, S., Whittaker, C., Mellan, T., Marwal, R., Datta, M., Sengupta, S., Ponnusamy, K., Radhakrishnan, V.S., Abdullahi, A., Charles, O., Chattopadhyay, P., Devi, P....

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J Infect Dis

SARS-CoV-2 B.1.617 Mutations L452R and E484Q Are Not Synergistic for Antibody Evasion

Authors Ferreira, I.A.T.M., Kemp, S.A., Datir, R., Saito, A., Meng, B., Rakshit, P., Takaori-Kondo, A., Kosugi, Y., Uriu, K., Kimura, I., Shirakawa, K., Abdullahi, A., Agarwal, A., Ozono, S., Tokunaga, K., Sato, K., Gupta, R.K., CITIID-NIHR BioResource COVID-19 Collaboration, Indian SARS-CoV-2 Genomics Consortium, Genotype to Phenotype Japan (G2P-Japan)...

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JCI Insight

Irreversible depletion of intestinal CD4+ T-cells is associated with T-cell activation during chronic HIV infection

Authors Asowata, O.E., Singh, A., Ngoepe, A., Herbert, N., Fardoos, R., Reddy, K., Zungu, Y., Nene, F., Mthabela, N., Ramjit, D., Karim, F., Govender, K., Ndung’u, T., Porterfield, J.Z., Adamson, J.H., Madela, F.G., Manzini, V.T., Anderson, F., Leslie, A., Kløverpris, H.N.

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Front Immunol

Antigen Presenting Cells Contribute to Persistent Immune Activation Despite Antiretroviral Therapy Initiation During Hyperacute HIV-1 Infection

Authors Naidoo, K.K., Ndumnego, O.C., Ismail, N., Dong, K.L., Ndung’u, T.

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J Int AIDS Soc

Transient association between semen exposure and biomarkers of genital inflammation in South African women at risk of HIV infection

Authors Jewanraj, J., Ngcapu, S., Osman, F., Ramsuran, V., Fish, M., Mtshali, A., Singh, R., Mansoor, L.E., Abdool Karim, S.S., Abdool Karim, Q., Passmore, J.-A.S., Liebenberg, L.J.P.

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Viruses

The Role of Phylogenetics in Discerning HIV-1 Mixing among Vulnerable Populations and Geographic Regions in Sub-Saharan Africa: A Systematic Review

Authors Nduva, G.M., Nazziwa, J., Hassan, A.S., Sanders, E.J., Esbjörnsson, J.

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Int Health

Pre-exposure prophylaxis for transgender women and men who have sex with men: qualitative insights from healthcare providers, community organization-based leadership and end users in coastal Kenya

Authors Kimani, M., Sanders, E.J., Chirro, O., Mukuria, N., Mahmoud, S., Rinke de Wit, T.F., Graham, S.M., Operario, D., van der Elst, E.M.

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Brief Bioinform

Simulation of African and non-African low and high coverage whole genome sequence data to assess variant calling approaches

Authors Alosaimi, S., van Biljon, N., Awany, D., Thami, P.K., Defo, J., Mugo, J.W., Bope, C.D., Mazandu, G.K., Mulder, N.J., Chimusa, E.R.

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