Publications

Front Microbiol

Increased Frequency of Inter-Subtype HIV-1 Recombinants Identified by Near Full-Length Virus Sequencing in Rwandan Acute Transmission Cohorts

Authors Umviligihozo, G., Muok, E., Nyirimihigo Gisa, E., Xu, R., Dilernia, D., Herard, K., Song, H., Qin, Q., Bizimana, J., Farmer, P., Hare, J., Gilmour, J., Allen, S., Karita, E., Hunter, E., Yue, L.

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Anal Bioanal Chem

A fast-screening dispersive liquid-liquid microextraction-gas chromatography-mass spectrometry method applied to the determination of efavirenz in human plasma samples

Authors Masenga, W., Paganotti, G.M., Seatla, K., Gaseitsiwe, S., Sichilongo, K.

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Infectious Diseases (except HIV/AIDS)

Persistent SARS-CoV-2 infection and intra-host evolution in association with advanced HIV infection (preprint)

Authors Karim, F., Moosa, M., Gosnell, B., Cele, S., Giandhari, J., Pillay, S., Tegally, H., Wilkinson, E., San, J., Msomi, N., Mlisana, K., Khan, K., Bernstein, M., Manickchund, N., Singh, L., Ramphal, U., COMMIT-KZN Team, Hanekom, W., Lessells, R., Sigal, A., de Oliveira, T.

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Viruses

HIV-1 Gag-Pol Sequences from Ugandan Early Infections Reveal Sequence Variants Associated with Elevated Replication Capacity

Authors Kapaata, A., Balinda, S.N., Xu, R., Salazar, M.G., Herard, K., Brooks, K., Laban, K., Hare, J., Dilernia, D., Kamali, A., Ruzagira, E., Mukasa, F., Gilmour, J., Salazar-Gonzalez, J.F., Yue, L., Cotten, M., Hunter, E., Kaleebu, P.

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Nat Commun

Emergence and phenotypic characterization of the global SARS-CoV-2 C.1.2 lineage

Authors Scheepers, C., Everatt, J., Amoako, D.G., Tegally, H., Wibmer, C.K., Mnguni, A., Ismail, A., Mahlangu, B., Lambson, B.E., Martin, D.P., Wilkinson, E., San, J.E., Giandhari, J., Manamela, N., Ntuli, N., Kgagudi, P., Cele, S., Richardson, S.I., Pillay, S., Mohale, T., Ramphal, U., Naidoo, Y., Khumalo, Z.T., Kwatra, G., Gray, G., Bekker, L.-G., Mad...

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Epidemiology

Rapid replacement of the Beta variant by the Delta variant in South Africa (preprint)

Authors Tegally, H., Wilkinson, E., Althaus, C.L., Giovanetti, M., San, J.E., Giandhari, J., Pillay, S., Naidoo, Y., Ramphal, U., Msomi, N., Mlisana, K., Amoako, D.G., Everatt, J., Mohale, T., Nguni, A., Mahlangu, B., Ntuli, N., Khumalo, Z.T., Makatini, Z., Wolter, N., Scheepers, C., Ismail, A., Doolabh, D., Joseph, R., Strydom, A., Mendes, A., Davis, M...

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J Immunol Methods

Comprehensive epitope mapping using polyclonally expanded human CD8 T cells and a two-step ELISpot assay for testing large peptide libraries

Authors Michelo, C.M., Dalel, J.A., Hayes, P., Fernandez, N., Fiore-Gartland, A., Kilembe, W., Tang, J., Streatfield, C., Gilmour, J., Hunter, E.

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Front Oncol

Promoter Hypermethylation Analysis of Host Genes in Cervical Cancer Patients With and Without Human Immunodeficiency Virus in Botswana

Authors Tawe, L., Grover, S., Zetola, N., Robertson, E.S., Gaseitsiwe, S., Moyo, S., Kasvosve, I., Paganotti, G.M., Narasimhamurthy, M.

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Infectious Diseases (except HIV/AIDS)

Reduced magnitude and durability of humoral immune responses by COVID-19 mRNA vaccines among older adults (preprint)

Authors Brockman, M.A., Mwimanzi, F., Lapointe, H.R., Sang, Y., Agafitei, O., Cheung, P., Ennis, S., Ng, K., Basra, S., Lim, L.Y., Yaseen, F., Young, L., Umviligihozo, G., Omondi, F.H., Kalikawe, R., Burns, L., Brumme, C.J., Leung, V., Montaner, J.S.G., Holmes, D., DeMarco, M., Simons, J., Pantophlet, R., Niikura, M., Romney, M.G.

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HIV/AIDS

Humoral immune responses to COVID-19 vaccination in people living with HIV receiving suppressive antiretroviral therapy (preprint)

Authors Brumme, Z.L., Mwimanzi, F., Lapointe, H.R., Cheung, P., Sang, Y., Duncan, M.C., Yaseen, F., Agafitei, O., Ennis, S., Ng, K., Basra, S., Lim, L.Y., Kalikawe, R., Speckmaier, S., Moran-Garcia, N., Young, L., Ali, H., Ganase, B., Umviligihozo, G., Omondi, F.H., Atkinson, K., Sudderuddin, H., Toy, J., Sereda, P., Burns, L., Costiniuk, C.T., Cooper, ...

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